Hi K24A4,
Happy Friday! It is possible the rotors were warped. A couple suggestions to re-check. Ensure that the caliper pins are free and slide easy. This will allow both brake pads to engage the rotor when the brake pedal is pressed. Also ensure that the brake pads themselves fit snugly (but not too tight) in the caliper. A brake pad that is too tight in the caliper will not move as freely as it should, and could cause uneven brake pad pressure on the rotor. Was the hardware kit (thin, wire metal clips) re-installed properly too?
By chance, were the tires rotated at all? Or are the tires still on the same side and location as before? Keep us posted.